Question: IMPUTE2 reference allele: same as matrixEQTL?
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gravatar for User 7754
3.5 years ago by
User 7754230
United Kingdom
User 7754230 wrote:

When a dosage file is used for eQTL analysis using matrixEQTL, and the dosage file is with respect to a specific allele (e.g. the allele outputted as reference in IMPUTE2), is this also the reference allele used for the effect size computed in matrixEQTL?

Thanks!

snp imputation impute2 matrixeqtl • 1.1k views
ADD COMMENTlink modified 3.5 years ago • written 3.5 years ago by User 7754230
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