Question: How to know the name of the pathways using KO numbers?
1
gravatar for utkarsh.sood
3.6 years ago by
utkarsh.sood30
India
utkarsh.sood30 wrote:

Hi I have a list of about 2300 Ko numbers. How can I get the map of pathways using these KO numbers in minimum time.

Thanks!

kegg pathway • 3.3k views
ADD COMMENTlink modified 2.9 years ago by Santiago Montero-Mendieta130 • written 3.6 years ago by utkarsh.sood30

Not sure what you mean by "map" but see if this has anything usable: How To Batch Grab All Ko (Kegg Ontology) Terms Associated With Each Kegg Pathway?

ADD REPLYlink modified 3.6 years ago • written 3.6 years ago by genomax76k
0
gravatar for EagleEye
3.6 years ago by
EagleEye6.5k
Sweden
EagleEye6.5k wrote:

Try this tool and see whether it serves your purpose, Gene Set Clustering based on Functional annotation (GeneSCF)

ADD COMMENTlink modified 3.6 years ago • written 3.6 years ago by EagleEye6.5k
0
gravatar for Santiago Montero-Mendieta
2.9 years ago by
Sweden

This can be solved by using KEGG Mapper – Reconstruct Pathway.

Just provide a gene list with your KO numbers.

ADD COMMENTlink modified 2.9 years ago • written 2.9 years ago by Santiago Montero-Mendieta130
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