Question: Large Sample Size RNA-Seq Datasets?
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gravatar for dv.venuto
2.8 years ago by
dv.venuto0
Hong Kong
dv.venuto0 wrote:

Are there any publicly available RNA-seq datasets that have a large number of samples per treatment. I am looking for a training set to validate a machine learning algorithm with so large differences in expression would be best (perhaps multiple cell types?).

rna-seq large size sample • 1.1k views
ADD COMMENTlink modified 2.8 years ago by WouterDeCoster38k • written 2.8 years ago by dv.venuto0
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gravatar for WouterDeCoster
2.8 years ago by
Belgium
WouterDeCoster38k wrote:

One suggestion would be http://www.geuvadis.org/web/geuvadis contains quite a lot of samples (If I'm not mistaken ~400 individuals) (not sure what you mean with large dataset). Also ENCODE has data available, http://genome.crg.es/~jlagarde/encode_RNA_dashboard/. Alternatively you could search for a suitable dataset yourself, e.g. through http://sra.dnanexus.com/

ADD COMMENTlink written 2.8 years ago by WouterDeCoster38k
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gravatar for dv.venuto
2.8 years ago by
dv.venuto0
Hong Kong
dv.venuto0 wrote:

bump

ADD COMMENTlink written 2.8 years ago by dv.venuto0
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