Entering edit mode
8.5 years ago
kvs
▴
20
Is there any way can we convert a vcf file to 23andMe format? The format is given below. rsids have been incorporated to the ID column of the vcf file. Here is the format output exptected
# rsid chromosome position genotype
rs4477212 1 82154 TT
rs3094315 1 752566 TC
rs3131972 1 752721 AA
rs12124819 1 776546 AC
rs11240777 1 798959 GA
rs6681049 1 800007 CC
Similar questions are not been addressed in any of the online forumn. Please help
looks good, I didn't notice this function before.
I am having problems with plink2
--recode 23 cannot be used with multi-char alleles
. I tried then to modify the vcf to remove multi-char alleles using VcfMultiToOneAllele, which did a great job but the output file, even though it looks like a vcf, it was not recognized as such by plink2no genotype data in .vcf file
. Any other tool up to the task?use :
to split from multiallelic to single one
Source: bcftools