Hi, I'm going tow work on the analysis of RNA-seq data. I have been struggling a lot in these 2 days to find out how to analyze them.
I feel like "Detection of Differentially Expressed Genes" could be a good subject to work on. The problem is I don't know how to input the data in R packages.
Does anyone have the experience in using statistical R packages such as "GPseq", "DEGseq", "edgeR", "DESeq", "NBPSeq", etc.?
If I only have the fastq files, how should I input the data? I also appreciate it If you introduce me any other software which is more user friendly and is also based on statistical approaches.