Question: ID conversion by BioMart
0
gravatar for seta
3.2 years ago by
seta1.2k
Sweden
seta1.2k wrote:

Hi all,

I usually use BioMart (http://plants.ensembl.org/biomart/martview/83143bdc76022c4236f4e68e5e8cbe8a) for ID conversion. Now, I'm trying to convert the TAIR ID into Ensemble gene and transcript IDs, but I'm surprised why there are not these options in the Attributes part. Could anybody please let me know what happened?

Thank you

id conversion ensembl • 2.1k views
ADD COMMENTlink modified 3.2 years ago by Denise - Open Targets5.0k • written 3.2 years ago by seta1.2k
2
gravatar for Denise - Open Targets
3.2 years ago by
UK, Hinxton, EMBL-EBI
Denise - Open Targets5.0k wrote:

The TAIR ID is the Gene stable ID in Ensembl Plants e.g. [AT1G01030][1,] whereas NGA3 is the gene name coming from UniProtKB. Plants and other non-vertebrates don't have Ensembl IDs such as ENSGXXXXXXXXXXX. These are for vertebrates only. You can convert TAIR IDs to Gene names and vice versa in BioMart. You can also choose to select WikiGene names

ADD COMMENTlink written 3.2 years ago by Denise - Open Targets5.0k

Thank you for your response.

ADD REPLYlink written 3.2 years ago by seta1.2k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 644 users visited in the last hour