Question: Retrieving gene names from list of mRNA accession IDs
0
gravatar for rse
4.0 years ago by
rse90
Singapore
rse90 wrote:

I have a list of mRNA accession IDs. I want to get the gene names for these IDs. Can anyone suggest how to do it ? I do it by Ensembl Biomart but something other than this, more automated?

next-gen • 2.3k views
ADD COMMENTlink written 4.0 years ago by rse90
3

can use biodbnet, g:Profiler,ncbi eutilities

ADD REPLYlink modified 4.0 years ago • written 4.0 years ago by Prasad1.6k

Thanks a lot for the suggestions

ADD REPLYlink written 4.0 years ago by rse90
1

Hello, if you know some Perl, maybe the BioMart Perl API might be useful for you.

ADD REPLYlink written 4.0 years ago by Anima Mundi2.7k

Bionetdb is a helpful tool for ID conversions

https://biodbnet-abcc.ncifcrf.gov/db/db2db.php

ADD REPLYlink written 4.0 years ago by Shamim Sarhadi210
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