Fastqvalidator compile problem
1
2
Entering edit mode
6.3 years ago

Hi!

Im gone crazy trying to install fastqvalidator on ubuntu16.4 I really dont know what I do wrong ;_;

  1. I downloaded fastQValidator_0.1.1, unzip at desktop 2.Open terminal at main folder
  2. git clone https://github.com/statgen/libStatGen.git
  3. Enter in folder libstatgen
  4. make all

I get this report, whats wrong with samtools?

cri@cri-To-be-filled-by-O-E-M:~/Desktop/fastQValidator_0.1.1/libStatGen$ make all
make[1]: Entering directory '/home/cri/Desktop/fastQValidator_0.1.1/libStatGen/samtools'
gcc -O4 -pipe -Wall  -I../include -I.   -D__ZLIB_AVAILABLE__ -D_FILE_OFFSET_BITS=64 -D__STDC_LIMIT_MACROS  -o obj/bgzf.o -c bgzf.c 
In file included from bgzf.c:32:0:
bgzf.h:34:18: fatal error: zlib.h: No such file or directory
compilation terminated.
../Makefiles/Makefile.common:74: recipe for target 'obj/bgzf.o' failed
make[1]: *** [obj/bgzf.o] Error 1
make[1]: Leaving directory '/home/cri/Desktop/fastQValidator_0.1.1/libStatGen/samtools'
Makefiles/Makefile.base:15: recipe for target 'samtools' failed
make: *** [samtools] Error 2
cri@cri-To-be-filled-by-O-E-M:~/Desktop/fastQValidator_0.1.1/libStatGen$

Thanks!!!!

fastqvalidator compile • 2.4k views
ADD COMMENT
1
Entering edit mode
6.3 years ago
GenoMax 121k

You need to install zlib. It could be as simple as sudo apt-get install zlib1g-devel or use software manager/relevant method you like.

ADD COMMENT
0
Entering edit mode

thanks once again!!! :))))

I got it!

I let here all steps if someday someone get in same situation as me:

Download fastQValidator_0.1.1, unzip at desktop

Open terminal at main folder

git clone https://github.com/statgen/libStatGen.git

Enter in folder libstatgen

sudo apt-get install zlib1g-dev

make LIB_PATH_GENERAL=/home/cri/Desktop/fastQValidator/libStatGen

(or "make all" ...in my case didnt worked)

ADD REPLY

Login before adding your answer.

Traffic: 1571 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6