I was assembling a set of 2x250 human reads with 72x coverage using the beta version of minia 3 that you kindly provided me, when I encountered this error:
[bug detected in adjacency data structure] was supposed to delete node AAAAAAAAAAAAAAAAAAAAAGGTCTGGGGTGTCATTATATTGCCCAGGCTGGTCTCAAACTCTTGGGCTCAAGTGATCCTCCCACCTTGGCCTCATAAGAGTGTTGGGATTACAGGCGTGAGCCACTGTGCCCGCCCTGTCTCTATTTATACAAATAAA but couldn't find it :(. assembly may be inaccurate around this kmer. will continue assembling anyway
It occurs (with different nodes) 3822419 times at k 144 and 3682804 times at k 160, but never at k 128 or below. The only difference between these runs, aside from k, is that I used "--debloom original" at k > 128.
Perhaps because of this bug, the run time has increased from ~20 h to > 100 h, and the N50 has dropped from 5777 (k128) to 822 (k144).
Is there a fix for this bug?