Question: TCGA: SNPs level 2
gravatar for ilana.sychikov
3.8 years ago by
ilana.sychikov20 wrote:

Hi everyone,

I would like to get snp level 2 data ( from TCGA (breast cancer). Unfortunately, TCGA site is down for maintenance, and the data available in the genomic data commons (, but I can't find it there. Can someone help me to find it? Is it possible that not all data is available there?

Thank you, Ilana

sequencing snp brca tcga • 1.9k views
ADD COMMENTlink written 3.8 years ago by ilana.sychikov20

I had this issue as well with level 2 SNP data, I emailed and after some work on their part they provided me with a manifest file to be used with the gdc-client.

ADD REPLYlink written 3.8 years ago by seth0

Thank you, it helped!

ADD REPLYlink written 3.7 years ago by ilana.sychikov20
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