Question: TCGA: SNPs level 2
2
gravatar for ilana.sychikov
3.1 years ago by
ilana.sychikov20 wrote:

Hi everyone,

I would like to get snp level 2 data (https://wiki.nci.nih.gov/display/TCGA/SNP+array-based+data) from TCGA (breast cancer). Unfortunately, TCGA site is down for maintenance, and the data available in the genomic data commons (https://gdc-portal.nci.nih.gov/), but I can't find it there. Can someone help me to find it? Is it possible that not all data is available there?

Thank you, Ilana

sequencing snp brca tcga • 1.7k views
ADD COMMENTlink written 3.1 years ago by ilana.sychikov20

I had this issue as well with level 2 SNP data, I emailed https://gdc.nci.nih.gov/support and after some work on their part they provided me with a manifest file to be used with the gdc-client.

ADD REPLYlink written 3.0 years ago by seth0

Thank you, it helped!

ADD REPLYlink written 3.0 years ago by ilana.sychikov20
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