Strand Specificity and Identification of Antisense RNA
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5.1 years ago
vimlakany • 0

HI I have a set of SRA data (Paired end), for which is it possible to find strand specificity using tools or softwares? And how to identify Antisense RNA and trans-encoded RNA?

RNA-Seq next-gen • 1.3k views
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5.0 years ago

You can use RSeQC to estimate whether the library is stranded or not. Antisense RNA is anything on the antisense side, so write a program for it (they probably already exist, but this is a very simple thing to write).

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