Question: Strand Specificity and Identification of Antisense RNA
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gravatar for vimlakany
4.0 years ago by
vimlakany0
vimlakany0 wrote:

HI I have a set of SRA data (Paired end), for which is it possible to find strand specificity using tools or softwares? And how to identify Antisense RNA and trans-encoded RNA?

rna-seq next-gen • 1.1k views
ADD COMMENTlink modified 3.9 years ago by Devon Ryan95k • written 4.0 years ago by vimlakany0
1
gravatar for Devon Ryan
3.9 years ago by
Devon Ryan95k
Freiburg, Germany
Devon Ryan95k wrote:

You can use RSeQC to estimate whether the library is stranded or not. Antisense RNA is anything on the antisense side, so write a program for it (they probably already exist, but this is a very simple thing to write).

ADD COMMENTlink written 3.9 years ago by Devon Ryan95k
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