Question: how is 1000g vcf generated ? call variants through all samples together or seperatly ?
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gravatar for kdjteda
3.7 years ago by
kdjteda0
kdjteda0 wrote:

how is 1000g vcf generated ? call variants through all samples or seperatly then merge them ?

sequencing snp genome • 696 views
ADD COMMENTlink modified 3.7 years ago by Emily_Ensembl20k • written 3.7 years ago by kdjteda0
1
gravatar for Jorge Amigo
3.7 years ago by
Jorge Amigo11k
Santiago de Compostela, Spain
Jorge Amigo11k wrote:

the quick answer would be multi-sample calling.

have you tried browsing the 1000g web site? you may want to start by looking at http://www.1000genomes.org/analysis, but further reading from http://www.1000genomes.org/1000-genomes-project-publications would be advisable.

ADD COMMENTlink modified 3.7 years ago • written 3.7 years ago by Jorge Amigo11k

Thanks for your answer.

ADD REPLYlink written 3.7 years ago by kdjteda0
0
gravatar for Emily_Ensembl
3.7 years ago by
Emily_Ensembl20k
EMBL-EBI
Emily_Ensembl20k wrote:

Please do not post identical questions to BioStars and the 1000 Genomes helpdesk.

ADD COMMENTlink written 3.7 years ago by Emily_Ensembl20k
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