Dear Biostars community.
I have 8 individuals from whom I run variant analysis (with GATK). So I have now 8 .vcf files.
These 8 individuals can be splitted into 2 groups and that's what I wanted to know.
Is there a way to merge the 8 .vcf files and to perform a kind of GWAS analysis to discriminate my samples ? Do you have any recommendation for a method ?