Entering edit mode
7.8 years ago
haiying.kong
▴
360
I would like to show reads that has phred score higher than certain threshold? Probably I should filter the bam file with samtools first, but is there any way to filter within IGV?
No, I want them to be out of the figure, those with low phred score.
You mean visually on the browser, the reads with less mapping quality should not be visible, Is'nt it? If it is so, the above solution will work.