Protein family analysis

Question

[Whoknows]

Hi guys

I have a set of UniProt ID which made from genome scaffold sequences. I wanted to perform protein family analysis and other downstream analysis for those scaffold sequences.

Is there tool/software which could give me information about protein families or clustering them in few groups of proteins?

I mean what kinds of analysis I can do for them?

Many thanks.

[GenoMax]

set of UniProt ID which made from genome scaffold sequences

Can you clarify what that means?

[Whoknows]

I mean UniProt ID which made from blastx against nt scaffold sequences