Question: ChIP data analysis high binding sites
1
gravatar for s.singh
3.6 years ago by
s.singh20
University of California, United States
s.singh20 wrote:

I have ChIP-seq data and I have mapped it to the reference genome using Bowtie-2. How to find the genomic region that have high binding sites for histone in ChIP data? Which tool should I use to find the binding sites?

chip-seq • 1.1k views
ADD COMMENTlink written 3.6 years ago by s.singh20
3

see here for peak calling https://github.com/crazyhottommy/ChIP-seq-analysis#peak-calling

ADD REPLYlink written 3.6 years ago by Ming Tang2.5k

This is best resource for ChIPseq data analysis by Tommy Tang

ADD REPLYlink written 3.6 years ago by Mike1.4k

Thanks !! It was a great help :)

ADD REPLYlink written 3.5 years ago by s.singh20
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