Question: trinityrnaseq install error
0
gravatar for Blithe
3.4 years ago by
Blithe0
Blithe0 wrote:

Hi, I'm pretty new in command line system. When I install "trinityrnaseq-2.2.0" tool with "putty", there are some errors as following that I don't know how to solve it. Before "make", I've loaded module, GCC-4.8.4, Java-1.8.0_45, ncurses/5.9-goolf-1.7.20, Bowtie2/2.2.5-goolf-1.7.20, from HPC computer. Meanwhile, some other modules were also automatically loaded as listed below:


Currently Loaded Modulefiles: 1) Java/1.8.0_45 5) OpenMPI/1.8.4-GCC-4.8.4 9) ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0 2) GCC/4.8.4 6) OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0 10) goolf/1.7.20 3) numactl/2.0.10-GCC-4.8.4 7) gompi/1.7.20 11) Bowtie2/2.2.5-goolf-1.7.20 4) hwloc/1.10.1-GCC-4.8.4 8) FFTW/3.3.4-gompi-1.7.20 12) ncurses/5.9-goolf-1.7.20

The errors information is:


gcc -g -Wall -O2 -o samtools bam_tview.o bam_plcmd.o sam_view.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o cut_target.o phase.o bam2depth.o padding.o bedcov.o bamshuf.o bam_tview_curses.o bam_tview_html.o  libbam.a -Lbcftools -lbcf -ltinfo -lcurses  -lm -lz -lpthread
/usr/bin/ld: cannot find -ltinfo
collect2: error: ld returned 1 exit status
make[3]: *** [samtools] Error 1
make[3]: Leaving directory `/home/uqbchen4/trinityrnaseq-2.2.0/trinity-plugins/samtools-0.1.19'
make[2]: *** [all-recur] Error 1
make[2]: Leaving directory `/home/uqbchen4/trinityrnaseq-2.2.0/trinity-plugins/samtools-0.1.19'
make[1]: *** [samtools] Error 2
make[1]: Leaving directory `/home/uqbchen4/trinityrnaseq-2.2.0/trinity-plugins'
make: *** [trinity_essentials] Error 2

Can you please give advise? Thanks! Regards

software error • 1.3k views
ADD COMMENTlink modified 3.4 years ago by RamRS24k • written 3.4 years ago by Blithe0
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