Question: no merged gtf file after running cuffmerge
0
gravatar for naveenlalosharma
2.4 years ago by
naveenlalosharma0 wrote:

I am analyzing the transcriptome of arabidopsis and everything worked well till the cuffmerge. After running the cuffmerge i didnt get the merged gtf file.

rna-seq next-gen • 730 views
ADD COMMENTlink modified 2.4 years ago by genomax58k • written 2.4 years ago by naveenlalosharma0

Was there an error? What command did you use to run cuffmerge?

ADD REPLYlink written 2.4 years ago by genomax58k

there is no error. /home/naveen/Desktop/cufflinks-2.2.1.Linux_x86_64/cuffmerge -g /home/naveen/Desktop/Tamips_transcriptome_analysis/AtRTD2_19April2016.gtf -s /home/naveen/Desktop/Tamips_transcriptome_analysis/genomeindex/Genome -p 50 /home/naveen/Desktop/Tamips_transcriptome_analysis/cuffdiff_out/assemblies.txt

ADD REPLYlink written 2.4 years ago by naveenlalosharma0

Did you solve the problem? I have same issue :'(

ADD REPLYlink written 10 months ago by bioinfo10
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