I want to count the cooccurrences of a disease pair or a disease-gene pair in all pubmed abstract to find evidence for the links. I have many such pairs and want to do an extensive search. Is there an easy way to do that? I am thinking to download all Pubmed abstracts and do the search myself. Can anybody let me know the best way to download all Pubmed abstracts (up to a limit, say last 20 years)? Since I only need abstracts, which are public, I think there should be easy ways but I couldn't find it on google. Thanks!
--Bingshan
Isn't this information already in OMIM? Where the disease entries have a
reference
section.I mainly want to have an assessment based on published papers to quantify the confidence of a disease pair or a disease-gene pair. I am not sure whether the OMIM reference has such info.
Not good enough to be an answer, but you can do text searching using https://textrous.irp.nia.nih.gov/ i.e. search for your gene and see whether the disease pops up