So I am looking for genome annotation tools that fits one or more of following requirement
start with current state of annotation (as in the tools can give different analysis in comparison to the old one if we update the database)
Manual annotation comes with text-mining tool that grabs information from literature and papers
Does computational annotation
UniProt seems fits the all three requirement but it seems only annotate proteins. We are also looking for tools that annotate RNA. Also, I am looking for multiple tools and they don't have to fit all the requirement list above. I am trying to see I can compare each tool's method on how their step of annotation so I can get more understanding in this field.
Please disregard this as it was on my old edit just (after did some research I find some tools such as BLAST2GO, or Prokka that may fits some of the requirement here However, based on my limited knowledge on this field I really don't know if I am on the right track. I wonder if anyone here can provide name of some tools that fits the requirement, or a site that can look for different kind of genomic annotation software.)