I'd like to know if anyone has or might know how can I make LD block from my SNPs list for the last human genome build (GRCh38). I'm currently working on the GWAS Iranian population. I'm trying remove high LD regions from my dataset in QC prosses.
I using of plink r2 command for finding connected SNPs. but I can't find the best way for estimating region LD blocks!
anyone can help me
Thanks a lot in advance for the attention!