LNRNA funcational annotation

Question

[Azhar]

I have Lnrna lists data in excel from microarray i want to do functiona annotation by DAVID or other source but problem is this the list i have multiple IDs how i can convert mutliple ID (genbank,ensemble,ucsc) into one refence list IDs or some other tool which want to do take mulitple list IDs?

Reply urgent please

[Ram]

Reply urgent please

Not a great idea - people are here helping out in their free time.

Answer 1

[EagleEye]

What do you mean by LNRNA ? Are you referring to LncRNAs (Long non-coding RNAs) ? If it is so, there are no functional annotation tool that can efficiently handle lncRNA functions but you can make use of these resources,

http://annolnc.cbi.pku.edu.cn/

http://mlg.hit.edu.cn/lncrna2function/

http://www.lncrnadb.org/

http://www.lncipedia.org/

http://ibl.mdanderson.org/tanric/_design/basic/index.html

http://mitranscriptome.org/

http://lncanet.bioinfo-minzhao.org/

Answer 2

[Denise CS]

You should be able to use BioMart to convert your set of IDs from one name to another. However it does not take a list of multiple IDs at once. You would need to do several queries.

Answer 3

[Azhar]

yes lnc RNA thanks

[Ram]

Do not add answers. Please see how I have added a comment for clarification on Dan's answer here: A: How do I ask a question on Biostars?