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7.8 years ago
srivvivek20
•
0
I want to count the number of occurrences of GQSes.
How to find a GQS pattern between sequences?
like 3:1:1 (GGCGGGTGGGG),4:2:1 (GGGGAGGGAGGGGG),23:21:7 (GGAGGAGGGGGTGGAGGAGGGGGTGGAGGAGGAGGAGGAGGAGGAGGAGGGTGGGAGGAGGGGGTGGAGGG)
Expression is as follow- regex.py -f -r [gG]{2,}\w{1}){3,}[gG]{2,} regex.py -f -r ([gG]{2,}\w{1,2}){3,}[gG]{2,} regex.py -f -r ([gG]{2,}\w{1,4}){3,}[gG]{2,}' regex.py -f -r ([gG]{3,}\w{1,3}){3,}[gG]{3,} regex.py -f -r '([gG]{3,}\w{1,7}){3,}[gG]{3,}'
The sequences are generated by this regX but i did not found exact pattern like 4:1:1 by programme.
Appreciate your time. Thanks!
