Question: How to calculate the insert size for Paired-end reads
1
gravatar for Ric
2.0 years ago by
Ric180
Australia
Ric180 wrote:

Hi I read this article ( http://bioinformatics.uconn.edu/bacterial-genome-assembly-tutorial/ ) and I just wonder how to calculate the insert size for Paired-end reads required by SSPACE -l option for the species library?

Thank you in advance.

Mic

insert-size sspace • 3.3k views
ADD COMMENTlink written 2.0 years ago by Ric180
1

Ops, I asked the question 5 years ago here ( Estimate Insert Size In Paired-End/Mate-Pair ).

ADD REPLYlink modified 2.0 years ago • written 2.0 years ago by Ric180

Using BBMap as described by @Brian here.

ADD REPLYlink written 2.0 years ago by genomax51k
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