How to calculate the insert size for Paired-end reads
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8.0 years ago
Ric ▴ 430

Hi I read this article ( http://bioinformatics.uconn.edu/bacterial-genome-assembly-tutorial/ ) and I just wonder how to calculate the insert size for Paired-end reads required by SSPACE -l option for the species library?

Thank you in advance.

Mic

SSPACE insert-size • 16k views
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Ops, I asked the question 5 years ago here ( Estimate Insert Size In Paired-End/Mate-Pair ).

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Using BBMap as described by @Brian here.

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