Replace XLOC id with gene symbol in FPKMmatrix function

Question

[Satyajeet Khare]

I am using FPKM matrix function in cummeRbund as follows

gene.matrix<-fpkmMatrix(genes(cuff))

However, I am interested in plotting Ensembl ids or Gene symbols instead of XLOC ids. Is there a way to edit fpkm matrix function in order to use gene_short_name instead of gene_id?

Thanks

Answer 1

[Satyajeet Khare]

Found one way.

gene.matrix<-fpkmMatrix(genes(cuff), fullnames=TRUE)