Question: Replace XLOC id with gene symbol in FPKMmatrix function
0
gravatar for Satyajeet Khare
3.0 years ago by
Satyajeet Khare1.4k
Pune, India
Satyajeet Khare1.4k wrote:

I am using FPKM matrix function in cummeRbund as follows

gene.matrix<-fpkmMatrix(genes(cuff))

However, I am interested in plotting Ensembl ids or Gene symbols instead of XLOC ids. Is there a way to edit fpkm matrix function in order to use gene_short_name instead of gene_id?

Thanks

rna-seq R • 1.5k views
ADD COMMENTlink modified 2.4 years ago by Biostar ♦♦ 20 • written 3.0 years ago by Satyajeet Khare1.4k
0
gravatar for Satyajeet Khare
3.0 years ago by
Satyajeet Khare1.4k
Pune, India
Satyajeet Khare1.4k wrote:

Found one way.

gene.matrix<-fpkmMatrix(genes(cuff), fullnames=TRUE)

ADD COMMENTlink modified 3.0 years ago • written 3.0 years ago by Satyajeet Khare1.4k
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