Question: lncRNA annotation trinity
gravatar for sdf.ambreen
3.7 years ago by
sdf.ambreen10 wrote:

I am studying has not assembled and i use cuff links as we generated Reference genome of Goldfish. i can not find lncRNA by use just have new isoforms no''u'"' class as mention in the literature that u, class is lncRNA and then i can analyze furher...but i can not find it in my data..i do not why


i use trinity. But i do not know next step....i have found some non-coding transcripts by using trinity. i have trinity.fasta file. i want to annotate lncRNA. How i can find it?? and how i can map to its reference Genome. and how i can use trinity.fasta file. for further i have just find some non-coding RNA. i want to map it as my reference genome is not well, how i can map it?

wouterdecoster • 1.1k views
ADD COMMENTlink written 3.7 years ago by sdf.ambreen10

I'm a tag? :o Honored, but don't think I can be of any use with this question.

ADD REPLYlink written 3.7 years ago by WouterDeCoster43k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1787 users visited in the last hour