I am running MISO and getting following warning:
WARNING - Asked to wait on cluster jobs but cannot parse their job IDs from the cluster submission system.
And in mysample.output/ directory, instead of having MISO run output, I have:
batch-genes , batch--logs, cluster_scripts, logs, scripts_output folders.
My command line is following:
miso --run /MISO/mm9/ALE.indexed /tophat_out/accepted_hits.bam --output-dir /MISO/mysample.output --read-len 60 --paired-end 149 7.9 --use-cluster
Has anybody got the same warning before? Any suggestion going to be helpful