Question: Where can I obtain fasta files of around multiple different European human genomes?
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gravatar for severalorks
4.2 years ago by
severalorks110
severalorks110 wrote:

I'm looking to obtain fasta files of multiple, from at least 10 to a few hundred (the number is arbitrary) different European human genomes for each chromosome. They should all be aligned to the same reference genome and their genomes should be the same length. Where can I find this data?

I've checked 1000Genomes and they have this data in the form of vcf files, and it's seems like it'd take a while to get genomes in fasta files from those. I was wondering if there is any other alternative resource?

fasta genome • 912 views
ADD COMMENTlink modified 4.2 years ago by Denise CS5.1k • written 4.2 years ago by severalorks110
2
gravatar for Denise CS
4.2 years ago by
Denise CS5.1k
UK, Hinxton, EMBL-EBI
Denise CS5.1k wrote:

The data on the 1000 Genomes FTP is also available as FASTQ under sequence read e.g. HG00107. Then you could do a FASTQ convert to FASTA.

ADD COMMENTlink written 4.2 years ago by Denise CS5.1k

Thanks. Is there a way I can get fasta files that skips indels?

ADD REPLYlink written 4.2 years ago by severalorks110
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