Question: Where can I obtain fasta files of around multiple different European human genomes?
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gravatar for severalorks
2.7 years ago by
severalorks90
severalorks90 wrote:

I'm looking to obtain fasta files of multiple, from at least 10 to a few hundred (the number is arbitrary) different European human genomes for each chromosome. They should all be aligned to the same reference genome and their genomes should be the same length. Where can I find this data?

I've checked 1000Genomes and they have this data in the form of vcf files, and it's seems like it'd take a while to get genomes in fasta files from those. I was wondering if there is any other alternative resource?

fasta genome • 670 views
ADD COMMENTlink modified 2.7 years ago by Denise - Open Targets4.9k • written 2.7 years ago by severalorks90
2
gravatar for Denise - Open Targets
2.7 years ago by
UK, Hinxton, EMBL-EBI
Denise - Open Targets4.9k wrote:

The data on the 1000 Genomes FTP is also available as FASTQ under sequence read e.g. HG00107. Then you could do a FASTQ convert to FASTA.

ADD COMMENTlink written 2.7 years ago by Denise - Open Targets4.9k

Thanks. Is there a way I can get fasta files that skips indels?

ADD REPLYlink written 2.7 years ago by severalorks90
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