Entering edit mode
7.7 years ago
agata88
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870
Hi all,
I was performing qiime workflow for 20 stool samples to see composition of bacteria. So as a result I have a BIOM file with otu table, a tree file which was used to generate alfa and beta diversity for all samples.
Right now I would like to make a PCOA plot only for one genus - Prevotella (for 20 samples), and see whether it divides in plot into two categories of clinical data. In other words, I would like to perform PCOA plot for prevotella for 20 dots on it divided into two clinical data groups. What steps should I perform?
Hope I've made everything clear.
Do you have any suggestions?
Thank you in advance!
Agata
