Question: how to make the difference between a specific strand and unstranded bam with visualisation
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2.7 years ago by
Bioiris0
Bioiris0 wrote:

Hello,

how to make the difference between a specific strand bam and another unstranded in IGV

thank you

rna-seq • 607 views
ADD COMMENTlink modified 2.7 years ago by EagleEye6.2k • written 2.7 years ago by Bioiris0
0
gravatar for EagleEye
2.7 years ago by
EagleEye6.2k
Sweden
EagleEye6.2k wrote:

I guess this will give you some idea what to look for, on IGV to check strand information (If you unaware of the protocol used for library preparation).

http://onetipperday.sterding.com/2012/07/how-to-tell-which-library-type-to-use.html

(Beware of the users comment from this blog - consider this too)

ADD COMMENTlink modified 2.7 years ago • written 2.7 years ago by EagleEye6.2k
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