Entering edit mode
7.7 years ago
mayegidio
•
0
Hello everybody! I have files and data base a file that I want to compare it , already installed hmmer more do not know what to do now . My files are in FASTA format . Agredeço everyone who can help me . ps: Forgive my English because I am making use of google translator .
What exactly do you want to do? And have you checked the manual?
Here, I know the use of HMMER while having the .hmm profiles from pfam and msa of our original sequences..If I would like to perform HMMER profiling for DNA sequences and followed manual which says makehmmerdb and den execute nhmmer and nhmmscan...Makehmmerdb created binary file..which is not going to be read by nhmmscan or nhmmer..Please suggest me the way to perform profiling and search for DNA /genomic sequences.