Question: What is the most popular and best tools/pipeline for small RNA seq analysis?
3
gravatar for archie.w.lee
22 months ago by
archie.w.lee40
archie.w.lee40 wrote:

Dear All

I have to analyze a small RNA-seq data. This is my first time working with small RNA. I search threads here but the most recent is 2013.There are several new tools/publictions since 2015 but they doesn't have much citations. I have no hint how to make choose. What is the most popular and best tools/pipeline for small RNA seq analysis?

Any help will be appreciated.

pipeline small rna seq • 1.4k views
ADD COMMENTlink modified 6 days ago by accfree0 • written 22 months ago by archie.w.lee40
1

Some options here. small RNA-seq pipelines

ADD REPLYlink written 22 months ago by genomax47k
2
gravatar for Prasad
22 months ago by
Prasad1.5k
India
Prasad1.5k wrote:

sRNAworkbench one of the easiest tool for the analysis. Apart from that

List of tools in OMIC tools, rna-seq, miranalyzer, shortran

ADD COMMENTlink modified 22 months ago • written 22 months ago by Prasad1.5k
1
gravatar for Floris Brenk
22 months ago by
Floris Brenk820
USA
Floris Brenk820 wrote:

https://oasis.dzne.de/ is a good one!

ADD COMMENTlink written 22 months ago by Floris Brenk820
0
gravatar for igor
22 months ago by
igor6.0k
United States
igor6.0k wrote:

Here a few options you can look into:

ADD COMMENTlink written 22 months ago by igor6.0k
0
gravatar for accfree
6 days ago by
accfree0
accfree0 wrote:

Another option is the SPAR small RNA-seq analysis webserver: https://www.lisanwanglab.org/SPAR.

Code: https://bitbucket.org/account/user/wanglab-upenn/projects/SPAR

Paper: https://doi.org/10.1093/nar/gky330

ADD COMMENTlink written 6 days ago by accfree0
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