What is the most popular and best tools/pipeline for small RNA seq analysis?
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6.4 years ago
FAST_GENOME ▴ 50

Dear All

I have to analyze a small RNA-seq data. This is my first time working with small RNA. I search threads here but the most recent is 2013.There are several new tools/publictions since 2015 but they doesn't have much citations. I have no hint how to make choose. What is the most popular and best tools/pipeline for small RNA seq analysis?

Any help will be appreciated.

pipeline small rna seq • 5.6k views
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Some options here. small RNA-seq pipelines

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6.4 years ago
Prasad ★ 1.6k

sRNAworkbench one of the easiest tool for the analysis. Apart from that

List of tools in OMIC tools, rna-seq, miranalyzer, shortran

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6.4 years ago
Floris Brenk ★ 1.0k

https://oasis.dzne.de/ is a good one!

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6.4 years ago
igor 13k

Here a few options you can look into:

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4.6 years ago
accfree • 0

Another option is the SPAR small RNA-seq analysis webserver: https://www.lisanwanglab.org/SPAR.

Code: https://bitbucket.org/account/user/wanglab-upenn/projects/SPAR

Paper: https://doi.org/10.1093/nar/gky330

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