Question: What is the most popular and best tools/pipeline for small RNA seq analysis?
3
gravatar for FAST_GENOME
2.1 years ago by
FAST_GENOME50
FAST_GENOME50 wrote:

Dear All

I have to analyze a small RNA-seq data. This is my first time working with small RNA. I search threads here but the most recent is 2013.There are several new tools/publictions since 2015 but they doesn't have much citations. I have no hint how to make choose. What is the most popular and best tools/pipeline for small RNA seq analysis?

Any help will be appreciated.

pipeline small rna seq • 1.6k views
ADD COMMENTlink modified 3 months ago by accfree0 • written 2.1 years ago by FAST_GENOME50
1

Some options here. small RNA-seq pipelines

ADD REPLYlink written 2.1 years ago by genomax54k
2
gravatar for Prasad
2.1 years ago by
Prasad1.5k
India
Prasad1.5k wrote:

sRNAworkbench one of the easiest tool for the analysis. Apart from that

List of tools in OMIC tools, rna-seq, miranalyzer, shortran

ADD COMMENTlink modified 2.1 years ago • written 2.1 years ago by Prasad1.5k
1
gravatar for Floris Brenk
2.1 years ago by
Floris Brenk850
USA
Floris Brenk850 wrote:

https://oasis.dzne.de/ is a good one!

ADD COMMENTlink written 2.1 years ago by Floris Brenk850
0
gravatar for igor
2.1 years ago by
igor6.5k
United States
igor6.5k wrote:

Here a few options you can look into:

ADD COMMENTlink written 2.1 years ago by igor6.5k
0
gravatar for accfree
3 months ago by
accfree0
accfree0 wrote:

Another option is the SPAR small RNA-seq analysis webserver: https://www.lisanwanglab.org/SPAR.

Code: https://bitbucket.org/account/user/wanglab-upenn/projects/SPAR

Paper: https://doi.org/10.1093/nar/gky330

ADD COMMENTlink written 3 months ago by accfree0
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