Question: Querying raw TCGA sequencing data on GDC
0
gravatar for Sebastian Boegel
2.6 years ago by
Germany
Sebastian Boegel460 wrote:

I realized that TCGA Data Access moved from cghub to GDC. Before the move i was using cquery and gtdownload to search and download TCGA raw sequencing data (we have dbgapo permission). Especially the search tool was great as it allows to search e.g.: Show me all BRCA RNA-Seq samples in fastq (i.e. not aligned).

How can i exactly do that with GDC?

Thank you for your help.

rna-seq gdc tcga • 1.5k views
ADD COMMENTlink written 2.6 years ago by Sebastian Boegel460
2

While it is not certain how long this access will last you may want to look at the legacy part of GDC for this: https://gdc-portal.nci.nih.gov/legacy-archive/search/f

ADD REPLYlink written 2.6 years ago by genomax62k

Thanks for your help. This was exactly what i was looking for.

ADD REPLYlink written 2.6 years ago by Sebastian Boegel460
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 838 users visited in the last hour