Querying raw TCGA sequencing data on GDC
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5.2 years ago

I realized that TCGA Data Access moved from cghub to GDC. Before the move i was using cquery and gtdownload to search and download TCGA raw sequencing data (we have dbgapo permission). Especially the search tool was great as it allows to search e.g.: Show me all BRCA RNA-Seq samples in fastq (i.e. not aligned).

How can i exactly do that with GDC?

Thank you for your help.

RNA-Seq TCGA GDC • 2.3k views
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While it is not certain how long this access will last you may want to look at the legacy part of GDC for this: https://gdc-portal.nci.nih.gov/legacy-archive/search/f

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Thanks for your help. This was exactly what i was looking for.

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