Question: LD analysis using closely related species and distance is in Basepair
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4.0 years ago by
bioengine0 wrote:

Hello all,

I am trying to do LD analysis to calculate LD decay/draw curve and calculate haplotype blocks. I have tried using HAPLOVIEW: which just gave me a big LD block. I am trying Plink, but my distance is in basepair, so when I draw graph, its just a square with all the SNPs scattered everywhere. I dont know how to proceed further. Can someone please help me in this regard.


linkage disequilibrium • 877 views
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