Question: How to delete not necessary tools from the local Galaxy instance?
0
gravatar for valentina_stepanenko
2.9 years ago by
valentina_stepanenko0 wrote:

How to delete not necessary tools from the local Galaxy instance? I want to use Galaxy as the backend for WGS microbe data processing and leave only few genome aligners and variant callers and add some R scripts and Python to represent a report tables. Need an advise on how to do that. Thx.

galaxy ngs wgs • 1.0k views
ADD COMMENTlink modified 2.9 years ago by Devon Ryan90k • written 2.9 years ago by valentina_stepanenko0

Go here

https://wiki.galaxyproject.org/Admin/Training/ISMB2010%20Galaxy%20Tutorial%3A%20Running%20Your%20Own

and find "This file contains everything necessary to defined the user interface of the tool"

ADD REPLYlink modified 2.9 years ago • written 2.9 years ago by natasha.sernova3.5k
1
gravatar for Devon Ryan
2.9 years ago by
Devon Ryan90k
Freiburg, Germany
Devon Ryan90k wrote:

Just uninstall anything not needed and/or remove it from the tool panel by modifying the xml files.

As an aside, you probably meant to ask this on the Galaxy site.

ADD COMMENTlink written 2.9 years ago by Devon Ryan90k

Thank you. Should I change tool_conf.xml.main file and remove not applicable tools and no more changes are required? And may I run the resultant Galaxy instance as a frontend on a conventional web hosting?

ADD REPLYlink modified 2.9 years ago • written 2.9 years ago by valentina_stepanenko0
1

You'll want to edit tool_conf.xml and shed_tool_conf.xml, assuming you don't have anything in local_tool_conf.xml that needs to go.

ADD REPLYlink written 2.9 years ago by Devon Ryan90k
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