Question: How to feed GenePattern with ArrayExpress Processed data?
gravatar for pathreskoo
4.6 years ago by
pathreskoo10 wrote:

I having problem in convert data into .gct format to feed into GenePattern for analysis.

I find a processed data in ArrayExpress, I upload it to GenomeSpace, then I try to convert it to GCT using GenePattern. However, when I use ExpressionFileCreator module, it failed and shows Err, and told me that "Error: No CEL files found. If you used a CLM it may have filtered out them all out." The same problem is seen even I choose a .raw file in ArrrayExpress.

Anyone have an idea how to convert this processed data into .gct format so that I can analyze it in GenePattern?

genepattern arrayexpress • 1.5k views
ADD COMMENTlink modified 13 months ago by iael.weissberg0 • written 4.6 years ago by pathreskoo10

I'm having the same problem. Did you find a solution?

ADD REPLYlink written 13 months ago by iael.weissberg0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1220 users visited in the last hour