Question: How to feed GenePattern with ArrayExpress Processed data?
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gravatar for pathreskoo
4.3 years ago by
pathreskoo10
pathreskoo10 wrote:

I having problem in convert data into .gct format to feed into GenePattern for analysis.

I find a processed data in ArrayExpress, I upload it to GenomeSpace, then I try to convert it to GCT using GenePattern. However, when I use ExpressionFileCreator module, it failed and shows Err, and told me that "Error: No CEL files found. If you used a CLM it may have filtered out them all out." The same problem is seen even I choose a .raw file in ArrrayExpress.

Anyone have an idea how to convert this processed data into .gct format so that I can analyze it in GenePattern?

genepattern arrayexpress • 1.4k views
ADD COMMENTlink modified 10 months ago by iael.weissberg0 • written 4.3 years ago by pathreskoo10

I'm having the same problem. Did you find a solution?

ADD REPLYlink written 10 months ago by iael.weissberg0
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