How to feed GenePattern with ArrayExpress Processed data?
0
0
Entering edit mode
5.9 years ago
pathreskoo ▴ 10

I having problem in convert data into .gct format to feed into GenePattern for analysis.

I find a processed data in ArrayExpress, I upload it to GenomeSpace, then I try to convert it to GCT using GenePattern. However, when I use ExpressionFileCreator module, it failed and shows Err, and told me that "Error: No CEL files found. If you used a CLM it may have filtered out them all out." The same problem is seen even I choose a .raw file in ArrrayExpress.

Anyone have an idea how to convert this processed data into .gct format so that I can analyze it in GenePattern?

GenePattern ArrayExpress • 1.8k views
ADD COMMENT
0
Entering edit mode

I'm having the same problem. Did you find a solution?

ADD REPLY

Login before adding your answer.

Traffic: 1419 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6