Question: Combine multiple query results in blastn
0
gravatar for rrcutler
3.2 years ago by
rrcutler120
United States
rrcutler120 wrote:

Hello all,

This may be already answered, but I could not find anything addressing this particular question. I am blasting contigs of a de novo genome assembly against the data base to determine which organism is most similar. However, in the blast results, I get metrics of how similar each separate contig is to other sequences. What I would like is an average of how similar all the contigs are to a particular genome. Any advice on this?

Many Thanks.

blastn • 718 views
ADD COMMENTlink modified 3.2 years ago by Prasad1.6k • written 3.2 years ago by rrcutler120

What is glass that you refer to in the title?

ADD REPLYlink written 3.2 years ago by genomax72k

Meant blastn, thanks for catching that.

ADD REPLYlink written 3.2 years ago by rrcutler120
1
gravatar for Prasad
3.2 years ago by
Prasad1.6k
India
Prasad1.6k wrote:

you can check most abundant genome in the result and calculate the coverage with respect that (coverage would be relative as blast reports HSPs).

ADD COMMENTlink written 3.2 years ago by Prasad1.6k
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