Question: Solanum tuberosum reference, where can I download it?
0
gravatar for agata88
3.8 years ago by
agata88790
Poland
agata88790 wrote:

Hi all,

I would like to perform RNA-seq analysis for potato. Unfortunately I cannot download genome, trancriptome or annotation files from Plant Genome Database (ftp side not working at all). Do you know where else I can download those reference files?

Many thanks for any suggestions,

Best,

Agata

rna-seq plant • 985 views
ADD COMMENTlink modified 3.8 years ago • written 3.8 years ago by agata88790
1
gravatar for WouterDeCoster
3.8 years ago by
Belgium
WouterDeCoster43k wrote:

Have a look here: http://plants.ensembl.org/Solanum_tuberosum/Info/Index

ADD COMMENTlink written 3.8 years ago by WouterDeCoster43k

Ha, great minds think alike.

ADD REPLYlink written 3.8 years ago by Emily_Ensembl20k

Indeed, and at the same time too :-)

ADD REPLYlink written 3.8 years ago by WouterDeCoster43k
1
gravatar for Emily_Ensembl
3.8 years ago by
Emily_Ensembl20k
EMBL-EBI
Emily_Ensembl20k wrote:

We have it in Ensembl Plants.

ADD COMMENTlink written 3.8 years ago by Emily_Ensembl20k
1
gravatar for lieven.sterck
3.8 years ago by
lieven.sterck7.8k
VIB, Ghent, Belgium
lieven.sterck7.8k wrote:

Or via the download link on this page: http://bioinformatics.psb.ugent.be/orcae/overview/Soltu

ADD COMMENTlink written 3.8 years ago by lieven.sterck7.8k
1
gravatar for genomax
3.8 years ago by
genomax83k
United States
genomax83k wrote:

In case you are partial for NCBI. Their version is here.

@agata88: Is google not available in Poland :-)

ADD COMMENTlink modified 3.8 years ago • written 3.8 years ago by genomax83k

Funny :P It is available :)

ADD REPLYlink written 3.8 years ago by agata88790
0
gravatar for agata88
3.8 years ago by
agata88790
Poland
agata88790 wrote:

Thank you a lot ! PS. Why searching for so long if I can have answers in few minutes ... lol :)

ADD COMMENTlink written 3.8 years ago by agata88790

Now we do want to know which one you are going to use ;)

ADD REPLYlink written 3.8 years ago by WouterDeCoster43k
1

Since @agata88 is in Europe (and looking at the upvotes) it looks like Ensembl :-D

ADD REPLYlink written 3.8 years ago by genomax83k

hehe, I used first one http://plants.ensembl.org/Solanum_tuberosum/Info/Index

:) Seems it's like "the sooner the better" :)

ADD REPLYlink written 3.8 years ago by agata88790
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