Solanum tuberosum reference, where can I download it?

Question

[agata88]

Hi all,

I would like to perform RNA-seq analysis for potato. Unfortunately I cannot download genome, trancriptome or annotation files from Plant Genome Database (ftp side not working at all). Do you know where else I can download those reference files?

Many thanks for any suggestions,

Best,

Agata

Answer 1

[WouterDeCoster]

Have a look here: http://plants.ensembl.org/Solanum_tuberosum/Info/Index

[Emily]

Ha, great minds think alike.

[WouterDeCoster]

Indeed, and at the same time too :-)

Answer 2

[Emily]

We have it in Ensembl Plants.

Answer 3

[lieven.sterck]

Or via the download link on this page: http://bioinformatics.psb.ugent.be/orcae/overview/Soltu

Answer 4

[GenoMax]

In case you are partial for NCBI. Their version is here.

@agata88: Is google not available in Poland :-)

[agata88]

Funny :P It is available :)

Answer 5

[agata88]

Thank you a lot ! PS. Why searching for so long if I can have answers in few minutes ... lol :)

[WouterDeCoster]

Now we do want to know which one you are going to use ;)

[GenoMax]

Since @agata88 is in Europe (and looking at the upvotes) it looks like Ensembl :-D

[agata88]

hehe, I used first one http://plants.ensembl.org/Solanum_tuberosum/Info/Index

:) Seems it's like "the sooner the better" :)