looking for 16S RNA sequence consensus
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8.3 years ago
sacha ★ 2.4k

I m looking for a 16s RNA sequence consensus ? Does it exist ? I want to make some alignement, to know exactly where my read comes from . Does my read comes from V3 or V4 region more precisely.

RNA16s sequence • 4.0k views
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What about the fasta sequence ?

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What fasta sequence do you want?

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I m looking for a 16S RNA fasta sequence. My objectif is to align a fastq on this reference using bwa.

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Are you interested in a specific bacterium? As linked below SILVA database has this file (or use one of the other db) which will have many organisms so you can select the sequence that you want from that file.

If you are looking to classify a metagenomic dataset then Kraken or Kaiju would be better options.

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