Question: Mina recompile for larger kmer error
0
gravatar for JackyBurton
16 months ago by
JackyBurton0 wrote:

I have been trying to recompile minia to run on a larger kmer length with the following command from the manual

`make clean && make k=100

but I receive the error

make: *** No rule to make target 'clean'. Stop.

typing make produces the error:

make: *** No targets specified and no makefile found. Stop.

So it appears minia does not have a makefile? I've tried reinstalling it and that does not solve the issue. Is there a way other than 'make' to recompile for a larger kmer? Or is there some other solution or mistake I am making?

thank you, any and all help appreciated.

minia kmer recompile • 397 views
ADD COMMENTlink written 16 months ago by JackyBurton0

Are you using these commands in the source code folder for Minia?

If you are using Minia on a shared machine/server then you would not be able to do this for the application installed for common use. You would need to compile your own copy with larger kmer from source.

ADD REPLYlink written 16 months ago by genomax39k

which version of minia? the updated manual for version 2 on the website (http://minia.genouest.org/files/minia.pdf) has a different build method: mkdir build && cd build && cmake -Dk4=160 .. && make -j 4

ADD REPLYlink modified 16 months ago • written 16 months ago by Rayan Chikhi1.2k
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