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Question: Correlation cluster map in R
1
gravatar for Govardhan Anande
2.7 years ago by
Govardhan Anande • 130
Australia
Govardhan Anande • 130 wrote:

Hi,

Anyone know package in R which will help me to generate correlation cluster map as mentioned in image : enter image description here

Here in Image both axis(i.e. X and Y) will have sample.

Thanks in advance.

Cheers
sequencing clustering correlation R • 2.1k views
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modified 2.7 years ago by EagleEye ♦ 6.2k • written 2.7 years ago by Govardhan Anande • 130
4
gravatar for Jean-Karim Heriche
2.7 years ago by
Jean-Karim Heriche ♦ 18k
EMBL Heidelberg, Germany
Jean-Karim Heriche ♦ 18k wrote:

Check this tutorial. R now has many heatmap packages. A new one I have started using is heatmaply.
ADD COMMENT • link written 2.7 years ago by Jean-Karim Heriche ♦ 18k
4
gravatar for EagleEye
2.7 years ago by
EagleEye ♦ 6.2k
Sweden
EagleEye ♦ 6.2k wrote:

I personally prefer pheatmap,

http://artax.karlin.mff.cuni.cz/r-help/library/pheatmap/html/pheatmap.html

Also try with ggplot2,

http://www.sthda.com/english/wiki/ggplot2-quick-correlation-matrix-heatmap-r-software-and-data-visualization

If you want beautiful plot use corrplot,

https://cran.r-project.org/web/packages/corrplot/vignettes/corrplot-intro.html
ADD COMMENT • link modified 2.7 years ago • written 2.7 years ago by EagleEye ♦ 6.2k
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