Off topic:PCA plot using exome-seq data VCF and 1000Genomes data
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7.7 years ago
VasGene ▴ 20

Dear all,

I would like to check the ancestry of several individuals for which I have individual VCF files. The VCF files are based on b37.

I would like to run principal component analysis to confirm overlap with individuals of Caucasian ancestry included in 1000Genomes and plot my results. Any idea how I could do this?

Thanks very much.

VCF 1000G PCA • 2.5k views
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