Hi, Sorry in advance if my question is too basic. I am new to ChIP-seq analysis and I have a list of .anno files from Homer annotatepeaks.pl (which annotates .bed files). I would like to plot a Density vs Distance from TSS graph using Homer .anno files. I saw different packages available (such as R ChIPseeker) that use .bed files as input to generate the same, after annotating the peaks as well. I was wondering if there is a package that uses the already annotated Homer output .anno files as input to generate a similar plot. Please let me know, thank you for your help!
Question: How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
3.8 years ago by
varsha619 • 90
varsha619 • 90 wrote:
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