Question: where to find Escherichia coli ST131 genome
0
gravatar for lait
3.3 years ago by
lait140
lait140 wrote:

In the description for a certain SRA file, the following expression is mentioned: Goal:Comparative genomics of ExPEC ST131 genomes.

This means that the organism for which NGS was made is e.coli, right? Now, if I need to download the reference genome for e.coli, is "E. coli K-12 MG1655" the same genome that I am looking for? or is this a different version? I found this genome in the following link:

http://www.ecogene.org/old/SequenceDownload.php?genome_name=ECOLI_2&from=1&to=4639675&radio=on

So, I need the reference genome for the SRA file that I have.

thanks

e.coli ngs genome • 991 views
ADD COMMENTlink modified 3.3 years ago by genomax74k • written 3.3 years ago by lait140
0
gravatar for natasha.sernova
3.3 years ago by
natasha.sernova3.6k
natasha.sernova3.6k wrote:

This is the strain from NCBI.

See this post below, you will easily find this strain:

where can I get environmental bacteria genome in fasta format (as many as possible)?

There are many formats inside, but the upper text-file proves that this is the strain you need:

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000285655.3_EC958.v1/GCA_000285655.3_EC958.v1_assembly_report.txt

The link to the Escherichia coli ST131 genome is below.

ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA_000285655.3_EC958.v1

ADD COMMENTlink modified 3.3 years ago • written 3.3 years ago by natasha.sernova3.6k
0
gravatar for genomax
3.3 years ago by
genomax74k
United States
genomax74k wrote:

You can find the E. coli ST131 genome at this link.

ADD COMMENTlink written 3.3 years ago by genomax74k
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