Help me with my GFFex results

Question

[elfkatzenbr]

Hallo dear community!

I'm new at bioinformatics, and recently used GFFex to extract intronic and intergenic regions. The question is, how do I validate these results? Anyone knows? Thanks a lot!

Answer 1

[Sinji]

You can validate a couple of these manually using a genome viewer such as IGV. You could also annotate your peaks using HOMER's annotatePeaks.pl or R's ChIPseeker.