Where do you cite R packages such as ggmap in a manuscript?
1
0
Entering edit mode
7.7 years ago
devenvyas ▴ 740

I am working on a manuscript where none of my analyses were actually done in R, but I used R to make a map figure (using ggmap) and I plotted results generated by other programs using R (some using ggplot2, some using basic functions within R).

In my methods section, I've dropped in sentences at the end of relevant sections basically stating that R (and ggplot2) was used to plot the results; however, my map figure is currently being introduced in the methods (and may end up getting moved into the intro). I am not quite sure where I would include that the map figure was generated with ggmap.

Any advice?

R • 2.4k views
ADD COMMENT
0
Entering edit mode

Sorry I don't have a direct solution. I typically search for such keywords eg ggmap or ggplot2 in pubmed central. It will give a list of papers mentioning them and from that the citation used can be obtained.

ADD REPLY
0
Entering edit mode

I think my question is getting is getting misunderstood. I am not asking where to get the citation. I am asking where within the manuscript would it be appropriate to put the in-text parenthetical citation saying the figure was generated using ggmap?

ADD REPLY
1
Entering edit mode

How about the figure legend, if you can't include it in methods?

ADD REPLY
1
Entering edit mode
7.7 years ago

Here's the citation information from CRAN.

Edit: In general, if there's something to cite it'll be mentioned in the package vignette or on CRAN/bioconductor. If there's nothing there, just provide a link.

ADD COMMENT

Login before adding your answer.

Traffic: 3327 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6