Question: Problem with accessions retrieved from batch entrez
0
gravatar for ehsansepahi
3.9 years ago by
ehsansepahi0 wrote:

I had a protein GI list from arabidopsis. Using batch entrez I found their relative proteins and then downloaded these proteins accessions. Now I want to map this accessions to uniprotkb, but ID mapper can't find any result. my accessions retreived from batch entrez are like these:
AAA32783.1

CAB62020.1

D71437

NP_176135.1

AAL91293.1

A9QGV6.1

What is the difference between these accessions? Why uniprot can't map my accessions? What can I do?

accession batch-entrez • 1.6k views
ADD COMMENTlink written 3.9 years ago by ehsansepahi0
1

This appears to be a mishmash of ID's. If you select RefSeq_Protein then the NP_* maps. Using Embl/GenBank/DDBJ CCDS maps two more (CAB, AAL) etc.

You may as well stick the GI list directly in the Uniprot ID mapper and be done.

ADD REPLYlink modified 3.9 years ago • written 3.9 years ago by genomax85k
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