Question: Renaming fasta file headers
0
gravatar for pendragon
3.3 years ago by
pendragon50
pendragon50 wrote:

I have large fasta files containing all the sequences of some large families of receptors, each sequence is currently indicated by the ensembl ID. I would like to change each ensembl ID header to be the gene ID. I have a list of all the corresponding IDs (ensembl - gene), is there a way to change these headers?

For example, I want to change this type of ID header:

>ENSMUSG00000055515|ENSMUST00000020547

Into this type of ID header:

> Vmn2r3

Thanks so much!

headers rename fasta • 2.2k views
ADD COMMENTlink modified 3.3 years ago by genomax74k • written 3.3 years ago by pendragon50
1

There are many posts on biostars with solutions for this request.
replace fasta headers with another name in a text file
Renaming fasta headers according to a matching name list

ADD REPLYlink modified 3.3 years ago • written 3.3 years ago by genomax74k
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