Renaming fasta file headers
0
0
Entering edit mode
7.7 years ago
pendragon ▴ 50

I have large fasta files containing all the sequences of some large families of receptors, each sequence is currently indicated by the ensembl ID. I would like to change each ensembl ID header to be the gene ID. I have a list of all the corresponding IDs (ensembl - gene), is there a way to change these headers?

For example, I want to change this type of ID header:

>ENSMUSG00000055515|ENSMUST00000020547

Into this type of ID header:

> Vmn2r3

Thanks so much!

fasta rename headers • 4.4k views
ADD COMMENT
1
Entering edit mode
ADD REPLY

Login before adding your answer.

Traffic: 2323 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6