Hi,
I am confused about the position numbers. From ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/release/20130502/ I downloaded ALL.chr17.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes and printed the beginning of the file, which looks like this:
CHROM POS ID REF ALT QUAL FILTER
17 52 rs556541063 C A 100 PASS
17 56 rs145615430 C T 100 PASS
17 78 rs148170422 G C 100 PASS
17 80 rs183779916 G A 100 PASS
Are the reference numbers unique for each positions?
Thanks for the help
Hi,
Yes, I was referring to the numbers starting with rs. Thanks for the helpful answer.